NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308142_1021608

Scaffold Ga0308142_1021608


Overview

Basic Information
Taxon OID3300031556 Open in IMG/M
Scaffold IDGa0308142_1021608 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_538_SCM (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)936
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000691Metatranscriptome933Y
F003984Metatranscriptome458Y

Sequences

Protein IDFamilyRBSSequence
Ga0308142_10216081F000691N/ASGRALFLLLAVTAAAEQSFLQAEPLENLEKLDQVPIVGSQFKANGVATSLQCVISLTIQYMLVYTALALVRTAADSFGLKYDNLPIQKILQTATITVNYAPMLAVLFLACRMRVTQLTKGKGNPPAWVQVCMYCCTYAVLMMTLIVVVIPLFTG
Ga0308142_10216082F003984N/AVDPKTGDIPSDTEPFKSQACAIAFTVLKFLIMIGLYGGALAIIYGIITYEPPAGTWPAGKSYPVAPAVQCTMILSCMYFLVYGLIQISRSWTQFTGSKFTKFENAMMTSTNCMNFAPMLAILFIGARMRALQMDPLNGNPQVWAQNCFFMCTYA
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