NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10114097

Scaffold Ga0307379_10114097


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10114097 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2904
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012773Metagenome / Metatranscriptome277Y
F093836Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307379_101140974F093836GAGGLDTSEQTRTRGTVVQEHLRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHEPKYEPDQLSGERVEEIVRNLPTFSRMVLKAAYVQYPYHLEHSIAQRLKISTDRYKTELKKAHELVAKSLKLD
Ga0307379_101140975F012773GGAMKGEKGVTVMIGLLGPGKEMGKESDSLLEDDMSECPLATSDEIVNKGNKQKAILTANYGPKEDERMCGNCEYGEKLKGCGLKKDEVYCQIFEFKCAKVNVCDAWDGGEEED
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