NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10027531

Scaffold Ga0307378_10027531


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10027531 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6694
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F022872Metagenome212Y
F083794Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0307378_1002753111F002287N/AMSQVGKLGYVDSKLGAPTSGQQTTRILFNTIENPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTITLFQLNSANILRNFGDLAQQTLSVIVGNQTVVKNIPIHFNQGINGQAFDRLHENAGVQSDNVTNPTELVQTRMPIEIRLLTDIVIPPQVAFEVRIESNAAGYETGAVTCALAGYGKIFSAGNTF
Ga0307378_100275318F083794GAGMTTTQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPATAVSNSTPSRGISDPGAESVLSYRAALDMQNQIATLTAENTRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0307378_100275319F022872N/AMSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILTVPTNAYAVIFGYDFSPAGGGFKFVSNLAATQAAGNRPVLNPSQIRFFETQQISFYTGTDFFPFIHHVNVTTSPVPAITDPGNGVLSLIDTLEEIDNTPISRQVYITSSKDITISVGLILDSDVATTGAIPITNRTPELLTYGGSPQTPAVQTDFGPFFTPIQFMQPSPKDFQDFAFGLLPNGANGQAFATPDPARGLLDPSQFLTSLGDAFRDAAAANYFLCLHYALYTETIPEQRG
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