NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10096638

Scaffold Ga0307378_10096638


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10096638 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3089
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075043Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_100966382F075043AGGAGGMRQVLSMLADIRQLQLEKHKAPADRVLTMKEMYHFFDNALSGVMLNEGGFDGPETKLQEVMTSADFTYAITEFVQRQMVPGYQVKGFAFEPLVKPDTTPNFLPVNRYQKRAGVDNLEYVTEKGETRPGYVQDAVKRQYQVHRWAKQFDFSMEALVNDDLGYFNDQARDMGLAARRTLEEYVSRMYTNAVSVLRLTNLGALYSQNGRLTSSRISECRMAFNQRVDARNVPIRARLKYLVHHAGLVDTVRVIRQSELIPELATNARNVIAGDFEPIEDPHMAGTAPNLRWWGFVDWKESNIVPFVLARRQGMPAPMILRKRSDIESITSLLGSGGSVPPIMGDFATGNVVVKVEDQWGTYIDTTTEGNLFDYRGAYYSAGTAQ
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