NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10590624

Scaffold Ga0307378_10590624


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10590624 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)976
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_105906241F002287N/ASKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTNGQTNLTQNKLDSMESMVIKTISLTQFASAGALQVFGGLVQQTLSIIVGNQTVVKNLPFHFNQGLIGQAFDRLHENGGADAQGLNATALLQNTMPAEIRLLTDIVIPPQVAFEVRIDSNQGIYGPGAVVCALSGYGKIFSAGNTF
Ga0307378_105906242F000710N/AMASSMDISYRQGIRSKGFAITCPTGTTQQTLSLSGLAKSFEGLIISSAFTATPQTLINPKQLRITLSINNDQAIDDDSAMSYAIPAVGGFSGGFPFFIPIPRRLTGQDTISLRIVNAAASQNVDVTVWYRNEL
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