NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_11032533

Scaffold Ga0307378_11032533


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_11032533 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016209Metagenome249Y
F028004Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_110325331F016209N/AMTILDAEYLEDTTFIDYNKSHYSKFMGYQLDNKKVIAEEWLLKPQYLSTGINTYDRKSGHFSNDLSNNGRSVIVIGTELQTFRKFEEMLKTYGWQTQDDWEVELKPQYLEYYKENNNTPIIINLK
Ga0307378_110325332F028004N/ATIKMKNFKITNLKSKVVQFMNESEKDQFFTKNSLGNYKREDVQTLKRERYNKKLHDFAFSVGVLAVFTILLFLMCGTLGFIDSLIF
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