NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_11240746

Scaffold Ga0307378_11240746


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_11240746 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)587
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019251Metagenome / Metatranscriptome231Y
F054027Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_112407461F054027AGGAMAKISNRLGIENIGGSQFELIIAAAHRARSYNAANPPLVATGPKRGMTALREIEKGVMPVAANREGMVNRYTTVRPKIKVVSEDN
Ga0307378_112407462F019251GGAMHLLQEIEMRNIKLKRIGDSVHVEFYEDGQMLGIIDYSDKSMHYVDDAVNNFRSGLMSEELIKSYSIKENTNG

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