NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308391_1001590

Scaffold Ga0308391_1001590


Overview

Basic Information
Taxon OID3300031567 Open in IMG/M
Scaffold IDGa0308391_1001590 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8967
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. FACHB-261(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051766Metagenome / Metatranscriptome143N
F062487Metagenome / Metatranscriptome130N
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308391_100159010F051766AGGAMPIKKQGIISGQYTFSGVEDNGLVTLTSQVDDVYIIEIQALTQLFSFISPYDVPIMIDSTVYQITNATDYASASNTLIYSTINTPRGNKTIIECEIKAIGIRPNSSVIFSTQEKWIIYPEKIYEIVNAGTQSFTLTTNSIAYLRLTGKRILPTQLTSNPL
Ga0308391_10015903F062487GGAMVALLSRTDRFALGINNYPRSIVWSAMMLLKANKVLNQSPTYPNAIRFGANRTTILIEAAFPYDRDIFTTTGGDIVSAVLPITGLSPYNGVLPIPPAEPVFLELPDPDDSRLDSLEKFLVWCCMQYKVGLNRFTNFDDAISVLFFDEQETEGYPTLRVRVNLPYSYTAYCCTGSIVRAVYELFVDNPCGSGVLSIDGRVILFDNNVLVDLGLIP
Ga0308391_10015906F079732AGGAGGMPLMDATKMIEEYTTDFGTKVKNLSVKILEGYADKINEYVSRTAENPCPFGNLFRPRALIATFLDGTKIRYPIGNRNNLITRARQLIANNAICVDYEGEYWPYVPSTIIGSNYRSSPLSGFTNSAVKVVGTFIYTSDVLGVIVQPFAIESEPNILAESAIACLNNVSYGSSFCTGAQSLNIKARRFRGKGLVMGQNKRTYSRDIKVSDPDPYNCGNVNAPNYYCLSYIGETIKNLHLLLPES
Ga0308391_10015907F091520N/AVASYVGNYVNDVGIQYRNIVLNTYFYDNGNRTSTTYDRDEMYLPTVFRSSTTRLLDKRATCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTDEFTAFFTELNNNSMFRLVNLKGESIPYGYYLVLSSITR
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