NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308393_1040444

Scaffold Ga0308393_1040444


Overview

Basic Information
Taxon OID3300031568 Open in IMG/M
Scaffold IDGa0308393_1040444 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012577Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0308393_10404441F012577N/AARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWYALGFGALQRDARISVAQNMGDMTRWKPVGSGFMPSSGYDSRGDLWEYEIVTIGGSLFARIRTKRTFTISNTMLFFLAYLYNQPERYVTITANERINVLITTLSGLATGVWVAPVTNIPSPNTYTLTLGTFTGIGSSGVVTAGNCFGWVVGVRANTGSETTAGATSVAFRATINDADGVGINDALLSIALIGRGGCCGVYLPPQTNVTLEKPDANLREIVEQSAVASLRYHRKRFLRDRPLTVIDFRTDSTLTWRFPETMRVIDISKAPNRVYAQYRGYWTDHLTATTSILSLEYRRQQLAWRVGSVGEYGSKTIAEERRDEAAVALDRQIAP
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