NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308144_1008839

Scaffold Ga0308144_1008839


Overview

Basic Information
Taxon OID3300031570 Open in IMG/M
Scaffold IDGa0308144_1008839 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_547_5m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1291
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045119Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0308144_10088391F045119N/ACEQKKLSFDEKQKLRADEIEAIGKASEILAGDDVSGNAAEHLGLVQSGSSFAQLRSTQATEGVNRQVRDFIASEGQRLHSKRLTLLSEKLAADPFAKIRGLIDDMITKLLEEANADAEKEGWCDTEMGKSKVTRNKLSEEIDGLDAAIEDGKATIMKLTQEVADLSKDIEDLDAEMTESTELRTKEKAKNKHTIMDSKAAQTAVSQATAVLKDFYAKAAKATALLQQKKAPASLVQTAGIKMGTEEWQALANPNFDGTIDKGHKAGMQTFGESYTGNQDAAGGVMALLEVALSDFANLEADTKATEAESESSYNKFMTEAKRSKATKAKKIELDDADKADTKTKLQEDVAELKSTQDELIAADKYHEKLVPQCIDQGMTWEQVQAARQEEIVSLKQALETLESQGNADTSA
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