NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308141_1003489

Scaffold Ga0308141_1003489


Overview

Basic Information
Taxon OID3300031571 Open in IMG/M
Scaffold IDGa0308141_1003489 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_535_32.3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2391
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036742Metagenome / Metatranscriptome169N
F099860Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0308141_10034891F036742AGGAGMPLWSSSLSPDSMEFEFDVTPGVGALEFTIHDNILLNSTDGAPLADAGFRLLLEEQIEKRPTWLNKDEQANCFANNEGWWLRHTKNSSGTQYWDECLVALGGLTGTSATTGLGVSQITHV
Ga0308141_10034892F099860N/AMEAVGTDWDTIRMNSTDGAPASNAGDRIIMEDDSQSGDGDKDHLQMEKQTTGTKMNYFFTIAGSDGAGTLTVARQAITLNSSTFKEAGDTETSDSGIMQQVSADITSAAVTMA
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