Scaffold Ga0310915_10009552

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310915_10009552

Scaffold Ga0310915_10009552

Overview

Basic Information
Taxon OID	3300031573 Open in IMG/M
Scaffold ID	Ga0310915_10009552 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5576
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002124	Metagenome / Metatranscriptome	591	Y
F007833	Metagenome / Metatranscriptome	344	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310915_100095522	F002124	GGA	MADQNEAKTKTIGFLPIEKVQTLNGWEEYVDKSAKLSILRTEAQRAKNCVRDALKERLNENSDMDFAVEGDRIRVFRVFRKQQQGRRTRTLDLSSSFREQQLERTAEPTGQADNQGVGDEAEDATPNLNPMTEEASLDPVTERLMALMREKGQR
Ga0310915_100095526	F007833	GGA	MPEWFYGVAQEWSIISAAPISFAIALVVVIIVVWAILHWFYRRALSSKDSQIEVLRSRLVDYRNVLQGASPREAGYKIAQLKGRLEAIKRAPRDENTIFQKGKRIGEVAGVRIDAANNAVVFDRMTIAGDFDQAGHVEFKNLVLAFVGLDGFSQTRQGRTLVNAQFSIVGNAETPPSASG

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