NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10363965

Scaffold Ga0310915_10363965


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10363965 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012822Metagenome / Metatranscriptome277Y
F034682Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_103639651F012822AGGAGMDNRRREPASVSSVTQHVLRGTLDTQVQADLAYTGDGHIKFHLGPVFFVLKGREAALSMRELIDKLTPVIDELYPDLDAEMQRQHREILRQATLDSHSRARVNGTEPAAIIVARRAAHHITT
Ga0310915_103639652F034682AGGAGMTSIQTYDRDGAALPELPPLPIGVLVVGTAELLQQAADLPQPRYISISATQSVGLQFAPEQASVRAVTRWALRFGSVMTSQPGQCHQGPGTWHRAEFGNCGIAVTAYAHVPAAPASS
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