NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247727_10007089

Scaffold Ga0247727_10007089


Overview

Basic Information
Taxon OID3300031576 Open in IMG/M
Scaffold IDGa0247727_10007089 Open in IMG/M
Source Dataset NameBiofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21590
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Virginia
CoordinatesLat. (o)38.1667Long. (o)-79.633Alt. (m)Depth (m)9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038289Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0247727_100070891F038289N/AVTQTPASENPEPRQPAIDENGVDRAQIREMLRLTPEERLRRVEEFVESTLEIRELNAARPVR
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