NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315308_1000919

Scaffold Ga0315308_1000919


Overview

Basic Information
Taxon OID3300031587 Open in IMG/M
Scaffold IDGa0315308_1000919 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)16839
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F012730Metagenome278Y
F106037Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315308_10009195F106037GAGMSKISLRECYFIKSSGANLDYLVEKVKSAIEEAGVPPKYHINVYKNVYACCGVSGTGLIVEIRGPQEEKIRSLDFKAVSKILEICEKEGIEHHSFEPLEVG
Ga0315308_10009197F006410GAGGVAEKPKVSPERAREMQERAKERSLILKEIKNQGPQTLDELSKVTGIEREKLFRHMIALRQFGKIAIVGERDNQLIYGLPEGETE
Ga0315308_10009199F012730AGAAGGLSSVDYDQMKGKTFTEIRVDEKLCEVCDKPIRTEERTLKTVQITDYNSYSNLLSRQRAHDRVEVDLEENKIFVYHHDYPGDVHKECIEKL

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