NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315308_1001876

Scaffold Ga0315308_1001876


Overview

Basic Information
Taxon OID3300031587 Open in IMG/M
Scaffold IDGa0315308_1001876 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)11973
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030967Metagenome183Y
F079544Metagenome115Y
F102444Metagenome / Metatranscriptome101Y
F104375Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315308_10018762F079544N/AVTEEKNLKRKIPRGRRGVSTIYTSLISLLLVFSILTLLFLTFVSYNLAVQEQMRIEHERSQEEIVISGLVLNETDLTISHVVVNNTGTIEVKIRAIYVTNSTTTTLICDPSTYMDTHIAPSESLRIRLPGGVAFEPNAKITVATERGVKTKEYEGILIFGSPKPRWKYNPSRLYIGPLMLQFDAFWYRKTFQNGNLDPNDRWHLGWSIPKGFGYCAWNITIMNIDDRNITINRFSSFTAVPNDSPSSELSWYLEPTNQTDLTHFLAVNQTQNIIYIWSTPKRFPEEGGTNSAQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVEQQ
Ga0315308_10018763F102444N/AMVITLKISGDCRALSPIFASLVILAIVTVLFIPVFIWSTGLTAETRSFWEISGLIATERIVIEEVNLRGNVTSCTIYVRNIGKTAIIVDDIFISLPDGSLHKYEKPQFSTDFDSVVQGDLMTINILDLGFTPTSDETYTVKVFTTRGVGDTYQVVA
Ga0315308_10018767F104375GAGGLDCPECHGTLVLPNGLNGEIICKRCGLVISQVRNSPGFTNWTPKWFSNWNEDDSDTLREWLTTLRTLSCQLNLPNFPYREEAARLIRLKSDMFFRSQRFGKNKREAVTALVHLILRKYNEIRPLKEICERLSLDHRLVMKYAWAMRKMTNFHRTFSAKDYLRKYGWKLTSDAELIQTAEQLLTNIRKEISGNPISLAAGALYFVCKSRKMRVSKDEIGEAFHISGRTVYSNERRISRVMSTKGFEF
Ga0315308_10018768F030967GAGGMDVAKLNRLEELEKRLKKLENHGFEDTLTLVEILSNVTFFGGLKMEKCKYAKEGQCGFFFLGSDAKKKIPIATDCRIRYCEGEPGHCHLELANVTCAFCPDYVPRAPNSENQK
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