NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1125844

Scaffold Ga0307996_1125844


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1125844 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063089Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307996_11258441F063089AGGTGGMTLRLQLYLIVGLAFVAGLFRWRSAYADAKLAEIDKQIASDRLDAALRKMEIEHDVETLGDVGLGERAAKWLR
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