Scaffold Ga0302131_1072645

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302131_1072645

Scaffold Ga0302131_1072645

Overview

Basic Information
Taxon OID	3300031594 Open in IMG/M
Scaffold ID	Ga0302131_1072645 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1238
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012320	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302131_10726451	F012320	GGAGG	MLKHITIILALFLSLTTQAISDIITVIVPSAVADALNDYRADCTEHGGELELDGDEISKLWTDQGEEAYVIRAAFTCGDLGHLWCGAMGHCPTNLVINNKFYDTNRILQKHPNRISKAPDGTVTYWTPDGIQLLIER

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