NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302134_10078222

Scaffold Ga0302134_10078222


Overview

Basic Information
Taxon OID3300031596 Open in IMG/M
Scaffold IDGa0302134_10078222 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1469
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F008914Metagenome326Y
F009992Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0302134_100782221F005103AGGMEMKEENNKIQIFINKKEMPYSHQNMIRAINSFFPYLTNDDLNEMSEYISTLKDHRREKEAESRLEVEKHSWPYPDTKKQI
Ga0302134_100782223F008914AGGAGMIDPFSAQIKAQREVAIEETRKWVRAWDADQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN
Ga0302134_100782224F009992N/AVGYVLGNGPSRDRNRTRYDGVTYGCNSIHKEMDVDVLVCMDAWSQFEVIASEYPADHECLFGGYNPMPVGIKPEDLNPPHYGIHYYNPEDRRRATDWYYYATSAADYERAKAEKYVMSYWKPDCGYVCWVGEGYKIKEIDYGVIPIGDIRPPSGAYALQEALKGGHDRIEVIGFDSIAGEFSVSLSNDRPEFELPSFPILQERMRKWLKYYRTVTEHYNEIEIIWHKQ
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