NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302134_10345176

Scaffold Ga0302134_10345176


Overview

Basic Information
Taxon OID3300031596 Open in IMG/M
Scaffold IDGa0302134_10345176 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070556Metagenome / Metatranscriptome123Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0302134_103451761F070556N/AMGFHKRYINDDQVIELYRTQGNQAVIDLYTKGVDAVITHGDLSEHILDMLDIGLLTKTDKWNKISELISDASIEKGFE
Ga0302134_103451762F092748N/ASLNQTAAISRKKVEHLGKNYASIDFEINEKVDATEFKYAKMKPVVGAFVIGNKRVDVTLSELNHIASTAIAATQACDLAYRMGKWGQPRPR

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