Scaffold Ga0302116_1001226

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302116_1001226

Scaffold Ga0302116_1001226

Overview

Basic Information
Taxon OID	3300031597 Open in IMG/M
Scaffold ID	Ga0302116_1001226 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15505
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus danicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000679	Metagenome / Metatranscriptome	939	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302116_10012261	F000679	GGA	MATNEHHEWLKKRDWPKVQLAICAHDRDLDLLRIKYKERDEHGRLPYHWMAAKAQTHTHILACVGVQSICLNPEALATRDNKGETPIDIAHRSGACAEIIGLLSLTPEEVRSLEWKGMAPLYAPVAYWWNEMVDWIKSRSYADCHKFINEHDDELVREVLKHHNSDLLLLVAQQSQTYSDSLVFLALRMIHRNPLSLTTKNIQGNTMLESAEHPKYNACIEIRNVLRLTPKYISSTPFPTLLRQHLPKQFVDEEVFGTYNTACTFIKHMKYDKAELVEVEDVLKKPTHKCDIC

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