NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302116_1084850

Scaffold Ga0302116_1084850


Overview

Basic Information
Taxon OID3300031597 Open in IMG/M
Scaffold IDGa0302116_1084850 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028393Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0302116_10848501F028393N/ATPDFFSNRTPFYTNPKERNFLQEVLNVNWYILGLSMFVVIYVGIVLGVHSSLPMSRIGSDGTPVSEEGNVTLILPIMVVGFVFGSIVFINTGKVKGLQTGAITWSYEISSRFQNAVLPAYMKATILVVGPFMMLTYSPDVTVVTCYNLELPAMIVYMIVANVMGTKPIKTFLLKEGAIDNAKADALKRRNSVRRASQAALIIVREHTTTQNKRYNGLKYLFAAMTNLLIFLAYPFTVLTLFRSFGVGGRMAIVLLFHPLIMEFLMHGYRAKTGVGTNWTGEEVKIDPMRDLMGVFILESYLVLIRRIMLCNLGSFQATTIAIIVTGIEETAIRSTIEVSERAKWAYANNTSNPIHPPPP
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