Scaffold Ga0307992_1292006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307992_1292006

Scaffold Ga0307992_1292006

Overview

Basic Information
Taxon OID	3300031601 Open in IMG/M
Scaffold ID	Ga0307992_1292006 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	570
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5958	Long. (^o)	78.1913	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104984	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307992_12920061	F104984	N/A	GAPLGIKYGLKTAGLGFKIGSRVANATVVSPITKILTGQVPGSGTKLFPKKLMYSNKIVPGTSRVVAKALRKGGKFAMFQAIQPLLRGVKYTGPDDLYSAGKISFKNKGEIPPFDEWKLFSVTNSNPLKARLGKIAGVVNYLTKEFTTPKAIYSIQEQAGLNIKSENRVVNKYIQDIESHAHKLVKAQGK

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