NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1003554

Scaffold Ga0307993_1003554


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1003554 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4618
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F056526Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307993_10035541F056526AGGAGMSIYNDIRAALESHLSDTAGLPSGIAYENVSFDPQVGTSFLKV
Ga0307993_10035546F002542GGAGMHPTYLGWQVDWPVFIKRPLMADSKTWSQGDHFNWLERGIDTDKVATLYASGYIHHNTELEVQTKAGDRLSELAGKQLETLVNLLNAEVKNRTSSTSEFEAKKCKKSKLDDKQRGLIRRFLNNSAWIMDHFYHVRDGILVE

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