NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307989_1001618

Scaffold Ga0307989_1001618


Overview

Basic Information
Taxon OID3300031603 Open in IMG/M
Scaffold IDGa0307989_1001618 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11764
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F004989Metagenome / Metatranscriptome416Y
F019911Metagenome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0307989_100161811F019911GAGGMKTFKGYLTEAPAWTESLSTMLFDLPRVGLKDVKIPLSPSIMKRIWPKSIRSKAFHVTNDDGVRKMKKLQGGKRSISAFYNIHPSMIGGIKTEGGYVIELEGDVLVAAPDDISSQPDKTGRRWLTFSSLMNPSTDSDPGLGGKAKLKGMEKDIEDMMWKIINTHTDYPKSMAEMSINAAWIELQSERKLYKKVMSFIIKDYMDGIEKIMKKYSKPLKSLFTDYAFDKELVPDPDSGDYALWDEVVVNNFKVKKVLVSAQFSPDFEGDDPLENSDFGWDVPFELYDDDGDLVDYIARARN
Ga0307989_100161813F000245GAGLKTFNEYISRGGDKTFGHEKKLDKIVSDEIKKRKLAKFPVNATDDFEMMRKPNKPAFTFPSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK
Ga0307989_10016184F004989GGAGMSIRLEELNTEKERLEGDRKVLLERLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDTKESSDDDS
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Institute for Fundamental Biomedical Research
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