Basic Information | |
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Taxon OID | 3300031603 Open in IMG/M |
Scaffold ID | Ga0307989_1001618 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11764 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Ocean | |||||||
Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 45 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F004989 | Metagenome / Metatranscriptome | 416 | Y |
F019911 | Metagenome | 227 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307989_100161811 | F019911 | GAGG | MKTFKGYLTEAPAWTESLSTMLFDLPRVGLKDVKIPLSPSIMKRIWPKSIRSKAFHVTNDDGVRKMKKLQGGKRSISAFYNIHPSMIGGIKTEGGYVIELEGDVLVAAPDDISSQPDKTGRRWLTFSSLMNPSTDSDPGLGGKAKLKGMEKDIEDMMWKIINTHTDYPKSMAEMSINAAWIELQSERKLYKKVMSFIIKDYMDGIEKIMKKYSKPLKSLFTDYAFDKELVPDPDSGDYALWDEVVVNNFKVKKVLVSAQFSPDFEGDDPLENSDFGWDVPFELYDDDGDLVDYIARARN |
Ga0307989_100161813 | F000245 | GAG | LKTFNEYISRGGDKTFGHEKKLDKIVSDEIKKRKLAKFPVNATDDFEMMRKPNKPAFTFPSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK |
Ga0307989_10016184 | F004989 | GGAG | MSIRLEELNTEKERLEGDRKVLLERLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDTKESSDDDS |
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