Scaffold Ga0307989_1003327

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307989_1003327

Scaffold Ga0307989_1003327

Overview

Basic Information
Taxon OID	3300031603 Open in IMG/M
Scaffold ID	Ga0307989_1003327 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6886
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5958	Long. (^o)	78.1913	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017670	Metagenome / Metatranscriptome	239	Y
F020440	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307989_100332713	F017670	N/A	EYSTNVLGESSFKNFWSDQGFEILSRLIEKYPDTLESVKIKDEKSKEYTISEFLDIIATLNLIK
Ga0307989_10033279	F020440	N/A	MSRTHEYSWNDWINIPKNKELYNANMNEGLRLFQLEKIRRARLTQATVFNLKGIK

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