NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307989_1005141

Scaffold Ga0307989_1005141


Overview

Basic Information
Taxon OID3300031603 Open in IMG/M
Scaffold IDGa0307989_1005141 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4842
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014792Metagenome260Y
F017906Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0307989_100514114F017906N/ANNLLDTCEIEEGERSQFDIFRSGKLFLSKETLGRFPTKEDVDDMIDCLDPYSG
Ga0307989_10051417F014792N/AMHNHERENYSWGVVQDMIEREVNSAYRLKEPPQMPSKKEIKRLIKEIVKGGKV

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