NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307989_1015066

Scaffold Ga0307989_1015066


Overview

Basic Information
Taxon OID3300031603 Open in IMG/M
Scaffold IDGa0307989_1015066 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2060
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010879Metagenome / Metatranscriptome298Y
F016206Metagenome / Metatranscriptome249Y
F023717Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0307989_10150662F010879GAGMAQKRQVLKEVLFDDVEEKIEYDFLTRDQFFSKVPQRPMSAHGIEMWEKYLQDPKGFKF
Ga0307989_10150663F016206AGGAMAQAKKTKKKITKVLTPIIESPKKVEKTVEVAVKYVNKTHWDTKEAFTAAIDKTGLSADQVNVNSEWDLYQSDTDGYRNHLKLEN
Ga0307989_10150664F023717AGGAGVAKFRSTKSKKELEKEGRALGVELDRRHSKEDLIEELEAVEPELARFATDKEAGFTEKSSDVTWNSIEEFTEAVTSTGMIFDSAFIPVNIKALYEAYTSNSAEFKETPAYKFLTK
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