NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10000512

Scaffold Ga0302132_10000512


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10000512 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21756
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (51.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010129Metagenome / Metatranscriptome308Y
F011890Metagenome286Y
F012068Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0302132_1000051225F011890AGGAGMKKLIIVLLTLFFTTVSYAETITIINSGKAGGSFNARTQMYKDGLEAAGYDITFENIGKISQAVKIFKDAEGPTIMVYATNQVYKQNLFHTDENFIMLEYQQPLYICRTNVSIGKIYSLTVAHGKGYDPALLTKLLGDNIILVPYKNSGAMLKGILGGDVDMMVNNQGKSLKYIASGEGTCGPSDKLPTMEATVIGTNIDVQSIREVIYNISISKKFADYHTSRKLYRPSGTWEDELTLAQSGEKGYEVKN
Ga0302132_1000051227F012068N/AMNALAKMFEPSKDRLISNAKRMMETCTDNWFKQYWTKVYVHLCKQYKKLH
Ga0302132_1000051232F010129N/AMAFDCFYKVKVTQNGKTETYHWGYFPYSMVLKDIKTLYKEGADAVILEMITQKQFDKIIKPYTP
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