NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10119956

Scaffold Ga0302132_10119956


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10119956 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1315
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019030Metagenome232Y
F096074Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0302132_101199564F019030AGGMSKEDIDSRKTYAVQRSTLEAIGIELLIAQREYEKQLNMHTHLITGECELVEADKVFYEEQVEYLTGLISHLHKVTKNELLLL
Ga0302132_101199565F096074AGGAMKKILGINSVVMNGIEKTTVTKITAKGITLTGKKGEQSLTFPLKDAEAAIQAGRWKVVD

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