Scaffold Ga0302132_10176559

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302132_10176559

Scaffold Ga0302132_10176559

Overview

Basic Information
Taxon OID	3300031605 Open in IMG/M
Scaffold ID	Ga0302132_10176559 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1041
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	121
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030606	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_101765591	F030606	AGCAGG	MGLCKMIRADEIAVCVSGLAREGYKEAMEIARKILPFKFFYMQWKDYPAPEVPDCEYFDEPQYDYHNLTDTKYKPDCDMWRKYAGSKRAKIFRKPGAWEKTKHNSKQTLAHYWLTNTLPKQYKTIIKLRYDTFLSTSVDFMPLLEEAQQGKVIGILATTDVDEPLQTHKYKDCKRCPGPYLWDHLIFHPREKLKNVEKMFKEKNLLGAEWGWHQVLC

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