NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302119_10000135

Scaffold Ga0302119_10000135


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10000135 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29340
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (73.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046650Metagenome / Metatranscriptome151Y
F050684Metagenome / Metatranscriptome145N
F105936Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_1000013516F105936AGGAGMANYGSTYNINQEGDLFTLQDHGSAPGLGKYASSKGTSVNSPLNYRFLKLFRGFDSQFFFFVKNQDRKPIMLQGVSVNASFIDRTDRSTVVSKKAIITDYDQGSIKVILTVGESSLFSQGLYDLVFSYTNDVGLVLPLYCDVNMRPNFTVECSEEGDALPLTTQINNTFTTKVINTVTYYYSSALKATGYFNKPNGLVTLAVYGTGYTGNFYVEGALSENPTEGDWFNITLGSYTDPFYPYIAHTGIDPWTFRTNVNYIRTKHTQPTGTLDKIVVRV
Ga0302119_1000013526F050684N/AMFDNDLIIPVESKMTRKTPFPYSTVSDVMCAAIAVHNKQGFVRSGQGYTDNSNPDIDPIETFDNKTVIMAQYLDTKVKFTQEQYDEANALIDNINGKLMIKKMTNNLNNFEQNVAKVLNEEDVNKFAVSIIASLPHSISIDKKREIVEDKMSSLKHSSQYFGTKKKRYDINVEVLDVKYIQTSDIYMITTIYAKKDIIKFWWRDQPDISDIITNKIIKIRATVNKHELSKYTNAKETMLNRVKILEV
Ga0302119_100001359F046650N/AMGISRPVEVLTGSTDFYTVYTLIDITDSGIVSPKVNANGFFQAQNLNTFIQSVSLRSQPVLSSVTILTAKDLSDYEFGSNFTGLHNVWVLKFASETADAWKKDNDDVYFLKQDFDTMPIHVTLDETVVINPESVDTSTVNTNTYFKFSENI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.