Scaffold Ga0302119_10000774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302119_10000774

Scaffold Ga0302119_10000774

Overview

Basic Information
Taxon OID	3300031606 Open in IMG/M
Scaffold ID	Ga0302119_10000774 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14466
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	450
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083278	Metagenome / Metatranscriptome	113	Y
F095611	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_1000077412	F083278	N/A	VRMRSQYNKELEEIQEAIVKTFSGVHGEKVLQFLEDLYQNQVSAVPDDPYSTYFNEGGRGLVIGIKQQIKSYKDSKQQPLKTHY
Ga0302119_100007744	F095611	AGG	MYPTEPPLKQCGKIQIVPYQLDHFKELVVRPHEGVMKEAIKLSDTQWAKAIGKEAVEAYTCYFEGEILLIGGINILWENVAEVWVIGSPAIPSLRFSYIKICKFYLKYAREKYKLKRVQAQVVKDYEMLHRFVKYLGFTYEGTLHNYCGGTIDNCMYAIWEK

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