NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10001166

Scaffold Ga0302119_10001166


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10001166 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11858
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069361Metagenome / Metatranscriptome124N
F103922Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_100011663F103922AGCAGGVKDKALIIPPSHMFDHWLKNHQKLGGFLASSYVDWDLLHSPCKDIIKKLEEYKRIPFECIMEFADAKVTDNNMEYRDVMEDVSKIFYLCELIQHNELTYNPQILHEPWHNRYRVHPGSGRLMALWLCGYEKIKTIYIHFDEPGFQPPGDCFIIKDRATAHQEFHINPQMHGTSTRHKLQVETYAAFPKLEVECIRTRDYDYEWDWSHIHTDKFWQFMRFSEGGEFLDYKNMWRSYAIDSWQDLQHDHIQIGSTEFNFDKHKDVKDVEGRVIEITRHTGSGDHIDHIIV
Ga0302119_100011664F069361AGGAMDHTDFKEARYLEKDWFSTFTLGHDNPGTRNWLDEGEKKLGCAQGWQEQSVEYYINHWRYRGELAPAMGASAAFGCSYTFGYGVNDPYPVLLDAVNCGLSGASNDQIARLAITYCKTFKPSEIYVMWTFKARREYVHETGALEKFRNLSEEAIKEELKSPTWLSSYLTLMNDKSDHYNYQKNKLMLFNFCENNDIVLRQKEITDLPKSLFSLARDNDHPGPDWHTNIAGILCER
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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