Basic Information | |
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Taxon OID | 3300031606 Open in IMG/M |
Scaffold ID | Ga0302119_10001166 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11858 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 70.5467 | Long. (o) | -122.9077 | Alt. (m) | Depth (m) | 450 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F069361 | Metagenome / Metatranscriptome | 124 | N |
F103922 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0302119_100011663 | F103922 | AGCAGG | VKDKALIIPPSHMFDHWLKNHQKLGGFLASSYVDWDLLHSPCKDIIKKLEEYKRIPFECIMEFADAKVTDNNMEYRDVMEDVSKIFYLCELIQHNELTYNPQILHEPWHNRYRVHPGSGRLMALWLCGYEKIKTIYIHFDEPGFQPPGDCFIIKDRATAHQEFHINPQMHGTSTRHKLQVETYAAFPKLEVECIRTRDYDYEWDWSHIHTDKFWQFMRFSEGGEFLDYKNMWRSYAIDSWQDLQHDHIQIGSTEFNFDKHKDVKDVEGRVIEITRHTGSGDHIDHIIV |
Ga0302119_100011664 | F069361 | AGGA | MDHTDFKEARYLEKDWFSTFTLGHDNPGTRNWLDEGEKKLGCAQGWQEQSVEYYINHWRYRGELAPAMGASAAFGCSYTFGYGVNDPYPVLLDAVNCGLSGASNDQIARLAITYCKTFKPSEIYVMWTFKARREYVHETGALEKFRNLSEEAIKEELKSPTWLSSYLTLMNDKSDHYNYQKNKLMLFNFCENNDIVLRQKEITDLPKSLFSLARDNDHPGPDWHTNIAGILCER |
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