NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10007725

Scaffold Ga0302119_10007725


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10007725 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4627
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y
F097373Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_1000772512F032859GAGGMSFGGGGSSSGVTAHTHNSSLANDGGSLSTSLTQIADTNLYSRIILGC
Ga0302119_1000772513F004537N/AMPFSNSIVNNYALNSGNTPLLYPVRIVVPAAPLLTNFGISFPDQFLGRAISLKITNNDGANACFYDYNLNGQFQSLAASNFDTIDNTVVNYLTVQAGVAGTTLVEAQVLPATRTEVPIEVMV
Ga0302119_100077252F005848AGGMALPVQRTYTATPVALNAPVFAIDNQTLQNNFLTLTPNVLQDIVNNPDPAGALQYQFTLVKNGNATSVRAFTTAISPLTAGRVPIGPVSMSSGSYQWQCTQTGAGAATATTILVRYGSPL
Ga0302119_100077258F097373N/AMGSQKERVERLQLLAKMKREQQDDGMSEVLSRKLLEDYMIQVWYLGHQTRSDYLEVLFRSQQR
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