NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10007805

Scaffold Ga0302119_10007805


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10007805 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4605
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005848Metagenome / Metatranscriptome388Y
F056893Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0302119_1000780510F005848AGGAGMALPVQRTYAATIAALNAPVFMVDNQTTLNSFLTLTPNVLQDVVNLVDPAATQLLQYTLVKNGNATSVRAFSSAISAATAGRVPIGPVSMSSGSYQWQAVQTVGALFNGQILVRYGSPLN
Ga0302119_100078053F056893GAGMRFPKKTSELRVHKTLTMTVSFWALVEQIRSKQGLDTADEAIFVSVRQLARKIGIEA

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