NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10017711

Scaffold Ga0302119_10017711


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10017711 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3030
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F001606Metagenome664N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_100177113F001606GAGGMTYGYDDVTTTSLGTGVAETQLNTATSLSAPDPAHAFLAVIPYQSESAAFTPDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFAAVQAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDSTNGAEQYYTRPTNETGAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPSYTGLGSAAGASTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0302119_100177114F000704AGGTGGMPHATSTIQPSKVKAIATYGIDAYGEDLFLPFTDVGLTETALTFSTAAITRDVEDSNQPMDDFPAVYSDTDAGLLLNEGNDTAFSQTYSFVPDMTAIIYAIHLVFPALVTCSAFTSGTLNVGALHIKITERSTNNRLLYENTFQSNAANLTGTGTSLHFFQRDIVETIKIEKGNPVDILVELVTVKTGTNTRQEGYTTLAPYLKTAVLKRFTPAGIALHLHADLSHADGVFKYKKDRVSLLGQ
Ga0302119_100177115F000730AGGLVSELIPPEIIPLVWFSVIAVTVYVFFRVFSSTLKEKFRQTNLTRKKAESSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI

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