NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10048984

Scaffold Ga0302119_10048984


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10048984 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F048371Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0302119_100489843F002348GGAMKPNEKWMRYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYFGIRIFNFSTFDEYKEKRMKLLHKLLS
Ga0302119_100489846F048371N/AMVMDLRKVTGVMLLTFMLLSYLSFRAEWNFFMFVKMIHFFRYIDLSLEYWVFLDRYIFNGLL

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