NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10193771

Scaffold Ga0302119_10193771


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10193771 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008151Metagenome / Metatranscriptome338Y
F075338Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_101937711F008151N/AAALLPDGALPDLVAIVERAMLRMSKKTVDAINANGLAGTLEWSQQLPFVQSVLVQAPSRATMIHGTTNRAISRAVATALEQGYSVGQLARGVPADKFPGLRSILTETENRARMIARTEVMRTQNLSSLGFFSEQGFRYVRADDIDGDPDDTYIDPGDPYRRTCAERNGQIYTVEQAQDIDDHPNGTLNWQPMPRNYRPEELA
Ga0302119_101937712F075338GGAGGMINKFHLSDAKVLDDRQGIVEAYVNTMGVKDADGDIIDPAAFDASIRANLPIPVLAGHDQSK
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