Basic Information | |
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Taxon OID | 3300031609 Open in IMG/M |
Scaffold ID | Ga0307275_1013318 Open in IMG/M |
Source Dataset Name | Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG16 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1139 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Subsurface Water → Freshwater Rna Viral Communities From High-co2 Subsurface Aquifer At Crystal Geyser, Utah, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | Depth (m) | 800 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007959 | Metagenome / Metatranscriptome | 341 | Y |
F037574 | Metagenome / Metatranscriptome | 167 | N |
Protein ID | Family | RBS | Sequence |
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Ga0307275_10133182 | F037574 | N/A | MTGIFADEVSEWTTITISKDTAKKLKEFFFGKETYNYVITFLLDYYDGKTYRF |
Ga0307275_10133183 | F007959 | N/A | MERHTDFKKFKQEYKKDFNIPVLSTKEKDIFMYLFILLRKKMSKGIFPELYNSEILFSKSDLKALILKNIVIFQNYKRGWTISINSHYITKNAECSFCGAKFNETVYFRQKSICCPGCGITMHALSAKRVKEYSVAIANIGKVEAIPKVTTSVVKVPIEHVITDVPGNLKITDIVL |
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