NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307275_1013318

Scaffold Ga0307275_1013318


Overview

Basic Information
Taxon OID3300031609 Open in IMG/M
Scaffold IDGa0307275_1013318 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG16 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1139
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Subsurface Water → Freshwater Rna Viral Communities From High-co2 Subsurface Aquifer At Crystal Geyser, Utah, Usa

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007959Metagenome / Metatranscriptome341Y
F037574Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0307275_10133182F037574N/AMTGIFADEVSEWTTITISKDTAKKLKEFFFGKETYNYVITFLLDYYDGKTYRF
Ga0307275_10133183F007959N/AMERHTDFKKFKQEYKKDFNIPVLSTKEKDIFMYLFILLRKKMSKGIFPELYNSEILFSKSDLKALILKNIVIFQNYKRGWTISINSHYITKNAECSFCGAKFNETVYFRQKSICCPGCGITMHALSAKRVKEYSVAIANIGKVEAIPKVTTSVVKVPIEHVITDVPGNLKITDIVL

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