Scaffold Ga0308009_10018612

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308009_10018612

Scaffold Ga0308009_10018612

Overview

Basic Information
Taxon OID	3300031612 Open in IMG/M
Scaffold ID	Ga0308009_10018612 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #127
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2772
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014154	Metagenome / Metatranscriptome	265	Y
F043442	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308009_100186121	F014154	N/A	MEGDIFKIKPLDEHASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIIS
Ga0308009_100186122	F043442	AGG	MEALQECKVKNVVLSFKYSYANITKFREKFDKLFVVAGTKTEPERYYELLKKHRGVYDHAIQYDVMYNMTETLKHYRKEREMGIDWTIPVLQENYLNHLSQLRLEPDTYVCLGEVHGRDETEDQIRKLPPNLKYHGLAKGRYTTKTRLFESLDTSGWISAAMSKKCEVWSNNSTNFMFFGDKGKTMIPMLNHACEVHKEYLELINLKKQDIIDGDYKALLKAPFALLYLPMCKQLNILKDNFNL

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