NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10204109

Scaffold Ga0302118_10204109


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10204109 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)945
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053542Metagenome141Y
F090999Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_102041091F053542N/AMTDKTSTITEGSQTGSRVVYPTHRNEEQIPILLRKIEPDERALGLVLDSWTKTVAAEPPWDYSCTPH
Ga0302118_102041092F090999N/AVTKAFEVTEEVIKEVEECGALGMTMDQTAWSMGVNPSTLYKYKAQMRELSDAISRGRARGIRSMTGNLRDQAADGNAQSTMFYLKNQSPTEWANDLQNVAKIQVNLSRISDSELLSELRDDPALLKAVNIPQIEE

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