NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308014_1013192

Scaffold Ga0308014_1013192


Overview

Basic Information
Taxon OID3300031628 Open in IMG/M
Scaffold IDGa0308014_1013192 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #229
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023454Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0308014_10131927F023454AGAAGMNQLDIDHLLSLGYWIQVSPLANSGSGWICGVYKRGKKSGNWITEATKQFNTPSECFEWANNQIRIFTSE

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