NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308014_1153482

Scaffold Ga0308014_1153482


Overview

Basic Information
Taxon OID3300031628 Open in IMG/M
Scaffold IDGa0308014_1153482 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #229
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011338Metagenome / Metatranscriptome292N

Sequences

Protein IDFamilyRBSSequence
Ga0308014_11534822F011338N/AGNLVVNFRNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTSFAPNNAITLEGGTGDGEIRLENESGVLQHPQSDSWSTTIADWNTLRFSGTLNSNVDGETMRLSDINGTKSSQNQRINFAFPTEVTKSAS
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