Scaffold Ga0302138_10038219

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302138_10038219

Scaffold Ga0302138_10038219

Overview

Basic Information
Taxon OID	3300031637 Open in IMG/M
Scaffold ID	Ga0302138_10038219 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1922
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	86
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020442	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302138_100382192	F020442	AGGA	MTNSILKKSALEKLEKLGLSQEEVLSLIDDGEETIVAEDGESDDTSESKSWQQLVMEEHLGYYNKRYNTDYNFEDYYDGVVNGEIEVHYNWKQMLGLEEQTPFPVDPNVNTEKFKKHGN

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