NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302138_10187451

Scaffold Ga0302138_10187451


Overview

Basic Information
Taxon OID3300031637 Open in IMG/M
Scaffold IDGa0302138_10187451 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)86
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024207Metagenome / Metatranscriptome207Y
F058285Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0302138_101874511F024207N/ATSKFLASPTGTALGIGATGAGLLASSMGSGGRQRGPLTQSRRNKSKVRQLVNFMGIEGTANFLSQSGGQNISPNDVVALLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRSASSTTLIRN
Ga0302138_101874512F058285AGGAMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRISSAVDVAGTTATVDTFLNVSVNNAEFSKDVSVPALVTGSPFGVLNGTYVNNDL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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