Scaffold Ga0302138_10226043

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302138_10226043

Scaffold Ga0302138_10226043

Overview

Basic Information
Taxon OID	3300031637 Open in IMG/M
Scaffold ID	Ga0302138_10226043 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	617
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	86
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013465	Metagenome	271	Y
F068123	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302138_102260431	F068123	GAGG	MMNPVINVGTEKNPMMVLCATTMVMIYEEATGKKFGDDMDDYVMFCDGYCEGYNENLERAPK
Ga0302138_102260432	F013465	GAGG	MNEQEYRDMYAEYCMESGTRMTDRGFVEFKAWRKRVEDLFDNSSDSS

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