Scaffold Ga0308001_10153689

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308001_10153689

Scaffold Ga0308001_10153689

Overview

Basic Information
Taxon OID	3300031644 Open in IMG/M
Scaffold ID	Ga0308001_10153689 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	939
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5735	Long. (^o)	77.9231	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308001_101536891	F003677	N/A	MVKALHILWGLSHYRKVVMTKVDEALYYFDKDVGKKVYEIEYDVTYVTKWQVLAKDDNEALNIWLEEHKIDMSTEDGKDTVCSYAKDYTQIGKC
Ga0308001_101536892	F003834	AGGAG	MSSTRTPIRQDEKDYIDNFIDVKYDSRKDTLKTEMQDTIDLESEGNFDAFKEKLKLTKLHQEVKQNFQDHEKFANEMDSTLLLKKGKLDNSINDLEVKLENWKKVRKWTTEIERSLIKHPDELDRLLKKLCHEETSRDFYSGPRGKSLQMLDMSKEYCRNLLNAGQSLATVWNVIDKEMSKEKINTSTIPKQEFLAITK

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