NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308001_10277467

Scaffold Ga0308001_10277467


Overview

Basic Information
Taxon OID3300031644 Open in IMG/M
Scaffold IDGa0308001_10277467 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017398Metagenome241Y
F023211Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0308001_102774671F023211AGGMKSFKQYLKEFVIQSTSDYVFDTLSSNTSDLKIPISPSMFKRIWPNTIRATVFHATDAEHLAGLKRLEGGKKSISAFFSMMANQMEGGIATDGG
Ga0308001_102774672F017398N/AGVNVILKKHKNDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSEISEWDAWDEQVVDKIKIEKVHTFNTATRPFEWIDDSVIPRLGRIPHKHWKSATELSTYISQVADAEVRTLGGWARKK
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