NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000012

Scaffold Ga0307514_10000012


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000012 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)475400
Total Scaffold Genes490 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)182 (37.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F026456Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000012342F004778GGAVLDGFELADGYLLGIMIDNPSSNYSMTHKLQSTLDASIIEWPALWKHIPYMAHDIQKALREFMCSLGVQGHTKSWATHECNQQCGENESINIGKSQRFRNEGNARINKVSAMRPGLGKIIETVRISRYVDRPETDLHIAENACCIDYADT
Ga0307514_10000012429F026456N/AMDGVMXAMAQKKSQWKEDLYCAVKVVQQKRSKYYAPVTPTTGVHLISAHILHPRQKLRLFTQCNKGMDINLEDETSYTIQ
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